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19:41354533 A / T


Filter Status
PASS
dbSNP
rs1801272
Allele Frequency
0.01859
Filtering AF
0.02447 (European (Non-Finnish))
Allele Count
2203 / 118526
UCSC
19-41354533-A-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 2 genes:

missense 3' UTR
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1659 65090 24 0.02549
East Asian 0 8420 0 0
Other 17 896 0 0.01897
African 46 9646 2 0.004769
Latino 139 11532 1 0.01205
South Asian 188 16364 13 0.01149
European (Finnish) 154 6578 4 0.02341
Total 2203 118526 44 0.01859

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.