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19:41515107 C / T

Note: This variant is multiallelic! The other alt alleles are:

Filter Status
PASS
dbSNP
rs148630516
Allele Frequency
0.01846
Filtering AF
0.2038 (African)
Allele Count
1913 / 103618
UCSC
19-41515107-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 67 56886 1 0.001178
East Asian 0 7482 0 0
Other 7 808 0 0.008663
African 1709 8056 179 0.2121
Latino 126 9630 1 0.01308
South Asian 4 14688 0 0.0002723
European (Finnish) 0 6068 0 0
Total 1913 103618 181 0.01846

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.