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19:41518221 T / C


Filter Status
PASS
dbSNP
rs28399499
Allele Frequency
0.006473
Filtering AF
0.06656 (African)
Allele Count
783 / 120960
UCSC
19-41518221-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 9 66518 0 0.0001353
East Asian 0 8624 0 0
Other 0 906 0 0
African 735 10382 40 0.0708
Latino 37 11474 0 0.003225
South Asian 2 16464 0 0.0001215
European (Finnish) 0 6592 0 0
Total 783 120960 40 0.006473

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.