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19:45395714 T / C


Filter Status
PASS
dbSNP
rs157581
Allele Frequency
0.2483
Filtering AF
0.4528 (African)
Allele Count
30134 / 121370
UCSC
19-45395714-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 10 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 14795 66732 1659 0.2217
East Asian 2008 8634 232 0.2326
Other 208 908 17 0.2291
African 4826 10406 1122 0.4638
Latino 3344 11566 502 0.2891
South Asian 3461 16510 391 0.2096
European (Finnish) 1492 6614 165 0.2256
Total 30134 121370 4088 0.2483

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.