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19:45854919 T / G

Note: This variant is multiallelic! The other alt alleles are:

Filter Status
PASS
dbSNP
rs13181
Allele Frequency
0.3308
Filtering AF
0.3825 (European (Non-Finnish))
Allele Count
39911 / 120642
UCSC
19-45854919-T-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 13 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 25655 66384 5029 0.3865
East Asian 652 8608 23 0.07574
Other 270 900 33 0.3
African 2303 10182 253 0.2262
Latino 2153 11516 228 0.187
South Asian 6145 16440 1219 0.3738
European (Finnish) 2733 6612 569 0.4133
Total 39911 120642 7354 0.3308

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.