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19:45992745 G / A

Warning! This variant is only covered in 48207 individuals (adjusted allele number = 96414).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.

Filter Status
Allele Frequency
Filtering AF
0 (None)
Allele Count
1 / 96414
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Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1 54352 0 1.84e-05
East Asian 0 7076 0 0
Other 0 718 0 0
African 0 8354 0 0
Latino 0 8994 0 0
South Asian 0 13060 0 0
European (Finnish) 0 3860 0 0
Total 1 96414 0 1.037e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.