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19:46032673 C / T


Filter Status
PASS
dbSNP
rs140959406
Allele Frequency
0.0006531
Filtering AF
0.006502 (African)
Allele Count
78 / 119434
UCSC
19-46032673-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 2 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 65742 0 0
East Asian 0 8586 0 0
Other 0 892 0 0
African 76 9574 0 0.007938
Latino 2 11548 0 0.0001732
South Asian 0 16478 0 0
European (Finnish) 0 6614 0 0
Total 78 119434 0 0.0006531

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.