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19:47258942 G / A


Warning! This variant is only covered in 33362 individuals (adjusted allele number = 66724).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs104894683
Allele Frequency
0.001589
Filtering AF
0.01524 (African)
Allele Count
106 / 66724
UCSC
19-47258942-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 35502 0 0
East Asian 0 4922 0 0
Other 0 482 0 0
African 100 5520 1 0.01812
Latino 6 7036 0 0.0008528
South Asian 0 11150 0 0
European (Finnish) 0 2112 0 0
Total 106 66724 1 0.001589

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.