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19:49206674 G / A


Filter Status
PASS
dbSNP
rs601338
Allele Frequency
0.3894
Filtering AF
0.4914 (African)
Allele Count
46782 / 120132
UCSC
19-49206674-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 30738 65868 7116 0.4667
East Asian 31 8596 0 0.003606
Other 367 896 80 0.4096
African 5148 10238 1280 0.5028
Latino 2863 11546 437 0.248
South Asian 5150 16390 1054 0.3142
European (Finnish) 2485 6598 482 0.3766
Total 46782 120132 10449 0.3894

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.