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19:55148242 C / T


Filter Status
PASS
dbSNP
rs1061684
Allele Frequency
0.1489
Filtering AF
0.1809 (European (Non-Finnish))
Allele Count
18029 / 121096
UCSC
19-55148242-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 18 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 12211 66512 370 0.1836
East Asian 751 8648 2 0.08684
Other 128 902 2 0.1419
African 347 10390 3 0.0334
Latino 1973 11556 40 0.1707
South Asian 1455 16502 37 0.08817
European (Finnish) 1164 6586 38 0.1767
Total 18029 121096 492 0.1489

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.