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19:6669986 G / A


Filter Status
PASS
dbSNP
rs2291667
Allele Frequency
0.001418
Filtering AF
0.007098 (East Asian)
Allele Count
172 / 121266
UCSC
19-6669986-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 40 66634 0 0.0006003
East Asian 75 8642 0 0.008679
Other 3 904 0 0.003319
African 0 10390 0 0
Latino 1 11570 0 8.643e-05
South Asian 4 16512 0 0.0002422
European (Finnish) 49 6614 1 0.007409
Total 172 121266 1 0.001418

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.