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2:138759649 C / T


Filter Status
PASS
dbSNP
rs11558538
Allele Frequency
0.1017
Filtering AF
0.1122 (European (Non-Finnish))
Allele Count
12165 / 119578
UCSC
2-138759649-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 7536 65888 452 0.1144
East Asian 347 8514 4 0.04076
Other 130 898 13 0.1448
African 211 10332 3 0.02042
Latino 1138 11318 57 0.1005
South Asian 1714 16076 93 0.1066
European (Finnish) 1089 6552 92 0.1662
Total 12165 119578 714 0.1017

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.