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2:152563394 C / A


Warning! This variant is only covered in 23254 individuals (adjusted allele number = 46508).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
VQSRTrancheSNP99.60to99.80
dbSNP
rs398124167
Allele Frequency
2.15e-05
Filtering AF
0 (None)
Allele Count
1 / 46508
UCSC
2-152563394-C-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1 22774 0 4.391e-05
East Asian 0 3532 0 0
Other 0 402 0 0
African 0 5390 0 0
Latino 0 1944 0 0
South Asian 0 9290 0 0
European (Finnish) 0 3176 0 0
Total 1 46508 0 2.15e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.