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2:172712480 T / C


Filter Status
PASS
dbSNP
rs2056202
Allele Frequency
0.8097
Filtering AF
0.8705 (East Asian)
Allele Count
98151 / 121220
UCSC
2-172712480-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 57319 66668 24618 0.8598
East Asian 7659 8634 3399 0.8871
Other 761 902 317 0.8437
African 6199 10352 1869 0.5988
Latino 6963 11554 2178 0.6026
South Asian 13744 16498 5743 0.8331
European (Finnish) 5506 6612 2302 0.8327
Total 98151 121220 40426 0.8097

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.