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2:198365788 C / T


Filter Status
PASS
dbSNP
rs2305560
Allele Frequency
0.162
Filtering AF
0.2321 (East Asian)
Allele Count
19541 / 120652
UCSC
2-198365788-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 21 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 11870 66558 1058 0.1783
East Asian 2081 8644 255 0.2407
Other 174 900 16 0.1933
African 612 10066 17 0.0608
Latino 2221 11564 233 0.1921
South Asian 1419 16308 70 0.08701
European (Finnish) 1164 6612 125 0.176
Total 19541 120652 1774 0.162

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.