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2:202625615 C / T


Filter Status
PASS
dbSNP
rs3219156
Allele Frequency
0.9106
Filtering AF
0.9822 (East Asian)
Allele Count
109922 / 120714
UCSC
2-202625615-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 60158 66706 27117 0.9018
East Asian 8625 8626 4312 0.9999
Other 822 898 378 0.9154
African 7681 9802 3007 0.7836
Latino 10823 11574 5068 0.9351
South Asian 15701 16494 7477 0.9519
European (Finnish) 6112 6614 2826 0.9241
Total 109922 120714 50185 0.9106

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.