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2:21225281 C / T


Filter Status
PASS
dbSNP
rs1042034
Allele Frequency
0.7057
Filtering AF
0.8309 (African)
Allele Count
83450 / 118244
UCSC
2-21225281-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 2 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 51189 65068 20099 0.7867
East Asian 2343 8356 338 0.2804
Other 634 894 227 0.7092
African 8441 9978 3559 0.846
Latino 8185 11258 2975 0.727
South Asian 7883 16160 1973 0.4878
European (Finnish) 4775 6530 1734 0.7312
Total 83450 118244 30905 0.7057

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.