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2:238253159 C / T


Filter Status
PASS
dbSNP
rs541928674
Allele Frequency
2.471e-05
Filtering AF
2.1e-05 (South Asian)
Allele Count
3 / 121402
UCSC
2-238253159-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1 66732 0 1.499e-05
East Asian 0 8654 0 0
Other 0 908 0 0
African 0 10404 0 0
Latino 0 11578 0 0
South Asian 2 16512 0 0.0001211
European (Finnish) 0 6614 0 0
Total 3 121402 0 2.471e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.