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2:27730940 T / C

Note: This variant is found in phase with 2-27730941-G-C in 16 individuals.

Filter Status
PASS
dbSNP
rs1260326
Allele Frequency
0.6429
Filtering AF
0.8497 (African)
Allele Count
77943 / 121246
UCSC
2-27730940-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 39278 66658 11745 0.5892
East Asian 4365 8624 1090 0.5061
Other 596 906 201 0.6578
African 8994 10402 3891 0.8646
Latino 7839 11552 2659 0.6786
South Asian 12554 16508 4797 0.7605
European (Finnish) 4317 6596 1409 0.6545
Total 77943 121246 25792 0.6429

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.