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2:45169352 G / T


Filter Status
PASS
dbSNP
rs199823175
Allele Frequency
0.0009445
Filtering AF
0.001333 (European (Non-Finnish))
Allele Count
110 / 116466
UCSC
2-45169352-G-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 3 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 101 63784 0 0.001583
East Asian 0 8298 0 0
Other 0 868 0 0
African 3 9136 0 0.0003284
Latino 6 11404 0 0.0005261
South Asian 0 16414 0 0
European (Finnish) 0 6562 0 0
Total 110 116466 0 0.0009445

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.