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2:48915089 G / T


Filter Status
PASS
dbSNP
rs121912525
Allele Frequency
1.653e-05
Filtering AF
3e-05 (Latino)
Allele Count
2 / 121020
UCSC
2-48915089-G-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 66682 0 0
East Asian 0 8654 0 0
Other 0 906 0 0
African 0 10082 0 0
Latino 2 11578 0 0.0001727
South Asian 0 16504 0 0
European (Finnish) 0 6614 0 0
Total 2 121020 0 1.653e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.