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2:86088311 T / C


Filter Status
PASS
dbSNP
rs3731824
Allele Frequency
0.2225
Filtering AF
0.3167 (South Asian)
Allele Count
26981 / 121258
UCSC
2-86088311-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 14489 66660 1591 0.2174
East Asian 2737 8636 450 0.3169
Other 201 906 28 0.2219
African 756 10390 35 0.07276
Latino 1742 11562 134 0.1507
South Asian 5347 16504 905 0.324
European (Finnish) 1709 6600 232 0.2589
Total 26981 121258 3375 0.2225

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.