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2:88874891 C / A


Filter Status
PASS
dbSNP
rs1805165
Allele Frequency
0.7021
Filtering AF
0.9351 (African)
Allele Count
85196 / 121352
UCSC
2-88874891-C-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 47996 66722 17236 0.7193
East Asian 4382 8632 1104 0.5076
Other 618 906 206 0.6821
African 9888 10400 4704 0.9508
Latino 7787 11570 2596 0.673
South Asian 10204 16512 3254 0.618
European (Finnish) 4321 6610 1414 0.6537
Total 85196 121352 30514 0.7021

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.