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20:25059546 T / C


Filter Status
PASS
dbSNP
rs12480307
Allele Frequency
0.2543
Filtering AF
0.4357 (African)
Allele Count
30878 / 121400
UCSC
20-25059546-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 10 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 14758 66736 1624 0.2211
East Asian 114 8652 1 0.01318
Other 220 908 30 0.2423
African 4645 10406 1046 0.4464
Latino 5073 11572 1170 0.4384
South Asian 4788 16512 720 0.29
European (Finnish) 1280 6614 125 0.1935
Total 30878 121400 4716 0.2543

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.