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20:32856998 A / G


Warning! This variant is only covered in 1985 individuals (adjusted allele number = 3970).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs6058017
Allele Frequency
0.2642
Filtering AF
0.6139 (African)
Allele Count
1049 / 3970
UCSC
20-32856998-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 138 796 14 0.1734
East Asian 23 82 5 0.2805
Other 10 48 1 0.2083
African 151 214 55 0.7056
Latino 10 46 0 0.2174
South Asian 716 2782 78 0.2574
European (Finnish) 1 2 0 0.5
Total 1049 3970 153 0.2642

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.