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20:42089511 T / C


Filter Status
PASS
dbSNP
rs2235611
Allele Frequency
0.8368
Filtering AF
0.9494 (African)
Allele Count
101557 / 121364
UCSC
20-42089511-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 57648 66720 24915 0.864
East Asian 6012 8634 2072 0.6963
Other 737 908 299 0.8117
African 10042 10404 4846 0.9652
Latino 10905 11576 5142 0.942
South Asian 10575 16508 3398 0.6406
European (Finnish) 5638 6614 2412 0.8524
Total 101557 121364 43084 0.8368

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.