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20:43042364 C / T


Filter Status
PASS
dbSNP
rs1800961
Allele Frequency
0.032
Filtering AF
0.04067 (Latino)
Allele Count
3748 / 117108
UCSC
20-43042364-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 2364 65116 52 0.0363
East Asian 114 8536 3 0.01336
Other 22 842 1 0.02613
African 62 9932 0 0.006242
Latino 491 11190 3 0.04388
South Asian 433 15756 9 0.02748
European (Finnish) 262 5736 5 0.04568
Total 3748 117108 73 0.032

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.