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20:43280227 C / T


Warning! This variant is only covered in 6783 individuals (adjusted allele number = 13566).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs73598374
Allele Frequency
0.1318
Filtering AF
0.1317 (South Asian)
Allele Count
1788 / 13566
UCSC
20-43280227-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 584 4472 11 0.1306
East Asian 43 374 0 0.115
Other 18 146 0 0.1233
African 12 384 0 0.03125
Latino 28 304 0 0.09211
South Asian 1084 7822 69 0.1386
European (Finnish) 19 64 0 0.2969
Total 1788 13566 80 0.1318

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.