Interested in working on the development of this resource? Apply here.

20:54961541 A / T


Filter Status
PASS
dbSNP
rs2273535
Allele Frequency
0.2735
Filtering AF
0.6639 (East Asian)
Allele Count
33181 / 121340
UCSC
20-54961541-A-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 14491 66710 1607 0.2172
East Asian 5867 8648 1974 0.6784
Other 267 908 47 0.2941
African 1467 10378 96 0.1414
Latino 4162 11572 753 0.3597
South Asian 5138 16510 823 0.3112
European (Finnish) 1789 6614 237 0.2705
Total 33181 121340 5537 0.2735

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.