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20:61981104 C / T


Filter Status
PASS
dbSNP
rs1044397
Allele Frequency
0.475
Filtering AF
0.527 (European (Non-Finnish))
Allele Count
56175 / 118268
UCSC
20-61981104-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 34425 64748 9170 0.5317
East Asian 3309 8448 605 0.3917
Other 415 868 101 0.4781
African 1270 9812 80 0.1294
Latino 5974 11428 1573 0.5228
South Asian 7284 16416 1669 0.4437
European (Finnish) 3498 6548 939 0.5342
Total 56175 118268 14137 0.475

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.