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20:6759115 A / T


Filter Status
PASS
dbSNP
rs235768
Allele Frequency
0.6743
Filtering AF
0.9185 (African)
Allele Count
81655 / 121092
UCSC
20-6759115-A-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 1 transcripts in 1 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 42569 66708 13539 0.6381
East Asian 7066 8642 2898 0.8176
Other 638 906 224 0.7042
African 9492 10160 4436 0.9343
Latino 8022 11556 2805 0.6942
South Asian 9976 16508 3039 0.6043
European (Finnish) 3892 6612 1149 0.5886
Total 81655 121092 28090 0.6743

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.