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22:18905893 C / A


Filter Status
PASS
dbSNP
rs1807467
Allele Frequency
0.001282
Filtering AF
0.001725 (South Asian)
Allele Count
155 / 120918
UCSC
22-18905893-C-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 14 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 77 66370 0 0.00116
East Asian 12 8636 0 0.00139
Other 0 902 0 0
African 9 10364 0 0.0008684
Latino 11 11554 0 0.0009521
South Asian 38 16492 1 0.002304
European (Finnish) 8 6600 0 0.001212
Total 155 120918 1 0.001282

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.