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22:21982892 C / T

Note: This variant is found in phase with 22-21982890-A-T in 2 individuals.

Warning! This variant is only covered in 41625 individuals (adjusted allele number = 83250).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs2298428
Allele Frequency
0.3007
Filtering AF
0.5501 (Latino)
Allele Count
25031 / 83250
UCSC
22-21982892-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 12 transcripts in 3 genes:

missense 3' UTR
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 11109 43848 1103 0.2534
East Asian 2777 6108 523 0.4546
Other 206 614 36 0.3355
African 422 5924 9 0.07124
Latino 4732 8398 1244 0.5635
South Asian 4263 14250 604 0.2992
European (Finnish) 1522 4108 250 0.3705
Total 25031 83250 3769 0.3007

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.