Interested in working on the development of this resource? Apply here.

22:42522613 G / C


Filter Status
PASS
dbSNP
rs1135840
Allele Frequency
0.4556
Filtering AF
0.6244 (Latino)
Allele Count
52967 / 116268
UCSC
22-42522613-G-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 18 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 28902 64490 6786 0.4482
East Asian 2483 8314 445 0.2987
Other 388 864 90 0.4491
African 3522 9736 740 0.3618
Latino 7133 11202 2321 0.6368
South Asian 7433 15460 1856 0.4808
European (Finnish) 3106 6202 749 0.5008
Total 52967 116268 12987 0.4556

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.