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22:42524243 CT / C


Filter Status
PASS
dbSNP
rs35742686
Allele Frequency
0.01308
Filtering AF
0.01715 (European (Non-Finnish))
Allele Count
1491 / 113974
UCSC
22-42524243-CT-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1130 62692 36 0.01802
East Asian 0 8390 0 0
Other 14 858 1 0.01632
African 31 9438 1 0.003285
Latino 34 10752 0 0.003162
South Asian 23 15536 0 0.00148
European (Finnish) 259 6308 5 0.04106
Total 1491 113974 43 0.01308

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.