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22:42526694 G / A

Note: This variant is found in phase with 22-42526692-T-C in 3 individuals.

Warning! This variant is only covered in 47919 individuals (adjusted allele number = 95838).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs1065852
Allele Frequency
0.2467
Filtering AF
0.5768 (East Asian)
Allele Count
23642 / 95838
UCSC
22-42526694-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 10 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 13286 53286 1648 0.2493
East Asian 4651 7870 1376 0.591
Other 151 730 22 0.2068
African 1180 7800 121 0.1513
Latino 1243 8216 99 0.1513
South Asian 2444 13542 264 0.1805
European (Finnish) 687 4394 40 0.1563
Total 23642 95838 3570 0.2467

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.