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3:113890789 T / C


Warning! This variant is only covered in 40788 individuals (adjusted allele number = 81576).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs3732783
Allele Frequency
0.1036
Filtering AF
0.1825 (Latino)
Allele Count
8449 / 81576
UCSC
3-113890789-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 3529 46878 125 0.07528
East Asian 121 5620 0 0.02153
Other 64 600 2 0.1067
African 1013 7204 60 0.1406
Latino 1284 6714 85 0.1912
South Asian 1838 10312 136 0.1782
European (Finnish) 600 4248 43 0.1412
Total 8449 81576 451 0.1036

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.