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3:139071543 C / T


Filter Status
PASS
dbSNP
rs147739245
Allele Frequency
0.0004536
Filtering AF
0.000518 (European (Non-Finnish))
Allele Count
55 / 121242
UCSC
3-139071543-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 45 66676 0 0.0006749
East Asian 0 8640 0 0
Other 0 902 0 0
African 0 10368 0 0
Latino 3 11548 0 0.0002598
South Asian 6 16500 0 0.0003636
European (Finnish) 1 6608 0 0.0001513
Total 55 121242 0 0.0004536

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.