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3:38663937 C / T


Warning! This variant is only covered in 47077 individuals (adjusted allele number = 94154).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs199473061
Allele Frequency
0.0001912
Filtering AF
0.001033 (Latino)
Allele Count
18 / 94154
UCSC
3-38663937-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 53428 0 0
East Asian 0 6912 0 0
Other 0 676 0 0
African 1 7600 0 0.0001316
Latino 14 8186 0 0.00171
South Asian 3 12362 0 0.0002427
European (Finnish) 0 4990 0 0
Total 18 94154 0 0.0001912

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.