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3:39307256 C / T


Filter Status
PASS
dbSNP
rs3732379
Allele Frequency
0.2209
Filtering AF
0.2698 (European (Non-Finnish))
Allele Count
26680 / 120764
UCSC
3-39307256-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 18225 66738 2430 0.2731
East Asian 207 8626 4 0.024
Other 195 900 16 0.2167
African 1313 9798 84 0.134
Latino 2676 11576 316 0.2312
South Asian 2245 16512 177 0.136
European (Finnish) 1819 6614 246 0.275
Total 26680 120764 3273 0.2209

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.