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3:41925398 C / T


Filter Status
PASS
dbSNP
rs1052501
Allele Frequency
0.7885
Filtering AF
0.8579 (Latino)
Allele Count
95200 / 120738
UCSC
3-41925398-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 55158 66728 22837 0.8266
East Asian 7096 8620 2956 0.8232
Other 700 900 277 0.7778
African 3515 9800 621 0.3587
Latino 10089 11568 4409 0.8721
South Asian 13543 16508 5596 0.8204
European (Finnish) 5099 6614 1964 0.7709
Total 95200 120738 38660 0.7885

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.