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3:46939587 C / T


Filter Status
PASS
dbSNP
rs121434601
Allele Frequency
0.001862
Filtering AF
0.002235 (European (Non-Finnish))
Allele Count
226 / 121388
UCSC
3-46939587-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 170 66720 0 0.002548
East Asian 0 8654 0 0
Other 1 908 0 0.001101
African 6 10404 0 0.0005767
Latino 2 11576 0 0.0001728
South Asian 47 16512 1 0.002846
European (Finnish) 0 6614 0 0
Total 226 121388 1 0.001862

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.