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3:49459578 G / A


Filter Status
PASS
dbSNP
rs386833679
Allele Frequency
4.144e-05
Filtering AF
1.2e-05 (European (Non-Finnish))
Allele Count
5 / 120644
UCSC
3-49459578-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 3 66130 0 4.537e-05
East Asian 1 8610 0 0.0001161
Other 0 900 0 0
African 0 10318 0 0
Latino 1 11562 0 8.649e-05
South Asian 0 16510 0 0
European (Finnish) 0 6614 0 0
Total 5 120644 0 4.144e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.