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3:50129399 C / T


Filter Status
PASS
dbSNP
rs2013208
Allele Frequency
0.6186
Filtering AF
0.8383 (East Asian)
Allele Count
70472 / 113920
UCSC
3-50129399-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 12 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 32923 61870 8379 0.5321
East Asian 7050 8246 3001 0.855
Other 498 866 137 0.5751
African 5641 9396 1627 0.6004
Latino 8258 10966 3108 0.7531
South Asian 12543 16194 4823 0.7745
European (Finnish) 3559 6382 963 0.5577
Total 70472 113920 22038 0.6186

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.