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3:53899276 C / T


Filter Status
PASS
dbSNP
rs1043261
Allele Frequency
0.09926
Filtering AF
0.1774 (South Asian)
Allele Count
11962 / 120512
UCSC
3-53899276-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 3 genes:

stop gained
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 5032 66202 175 0.07601
East Asian 1584 8624 149 0.1837
Other 86 902 5 0.09534
African 924 10226 41 0.09036
Latino 1067 11502 58 0.09277
South Asian 3009 16458 304 0.1828
European (Finnish) 260 6598 5 0.03941
Total 11962 120512 737 0.09926

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.