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3:8775661 C / T


Filter Status
PASS
dbSNP
rs1008642
Allele Frequency
0.301
Filtering AF
0.5496 (African)
Allele Count
35991 / 119554
UCSC
3-8775661-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 17462 65934 2334 0.2648
East Asian 3435 8590 671 0.3999
Other 285 886 41 0.3217
African 5714 10172 1581 0.5617
Latino 3748 11308 602 0.3314
South Asian 3403 16174 359 0.2104
European (Finnish) 1944 6490 285 0.2995
Total 35991 119554 5873 0.301

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.