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4:100045574 T / C


Filter Status
PASS
dbSNP
rs1042364
Allele Frequency
0.7887
Filtering AF
0.9814 (East Asian)
Allele Count
90051 / 114176
UCSC
4-100045574-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 7 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 44234 62130 15617 0.712
East Asian 8457 8464 4225 0.9992
Other 641 854 239 0.7506
African 8742 9792 3905 0.8928
Latino 9672 11020 4256 0.8777
South Asian 13519 15550 5902 0.8694
European (Finnish) 4786 6366 1797 0.7518
Total 90051 114176 35941 0.7887

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.