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4:100047929 G / A


Filter Status
PASS
dbSNP
rs10009145
Allele Frequency
0.3928
Filtering AF
0.5165 (South Asian)
Allele Count
46745 / 119012
UCSC
4-100047929-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 10 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 28872 65714 6287 0.4394
East Asian 979 8598 57 0.1139
Other 373 886 85 0.421
African 1319 9886 86 0.1334
Latino 3815 11460 669 0.3329
South Asian 8354 15884 2229 0.5259
European (Finnish) 3033 6584 709 0.4607
Total 46745 119012 10122 0.3928

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.