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4:46314593 T / C


Filter Status
PASS
dbSNP
rs279858
Allele Frequency
0.398
Filtering AF
0.505 (Latino)
Allele Count
47892 / 120328
UCSC
4-46314593-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 12 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 27830 66404 5873 0.4191
East Asian 4460 8630 1175 0.5168
Other 325 902 54 0.3603
African 2642 10376 328 0.2546
Latino 5963 11558 1546 0.5159
South Asian 3856 15850 464 0.2433
European (Finnish) 2816 6608 632 0.4262
Total 47892 120328 10072 0.398

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.