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4:6303194 C / T

Note: This variant is multiallelic! The other alt alleles are:

Filter Status
PASS
dbSNP
rs199946797
Allele Frequency
0.0004866
Filtering AF
0.000664 (European (Non-Finnish))
Allele Count
59 / 121240
UCSC
4-6303194-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 56 66618 1 0.0008406
East Asian 0 8650 0 0
Other 1 906 0 0.001104
African 1 10366 0 9.647e-05
Latino 0 11574 0 0
South Asian 1 16512 0 6.056e-05
European (Finnish) 0 6614 0 0
Total 59 121240 1 0.0004866

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.